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Environmental Stewardship and Plant Genomics

Erosion
Image courtesy USDA/ARS.
The enormous scale of agricultural production—and the resulting environmental impacts—has made developing more sustainable and environmentally friendly agriculture a significant 21st-century challenge.


Stretching Limited Resources: Plants That Can Hold Their Water

Water is one of the most precious resources on earth. Although it covers 71 percent of the planet, only a small fraction is available as freshwater for use by humans, animals, and plants. Competition for water resources is increasing as human populations expand and water demand grows. Increasing temperatures caused by climate change are likely to mean thirstier plants and people, putting even more pressure on limited water supplies. Although some crops have been bred for drought tolerance, the genome sciences have vastly enhanced the ability to manipulate this important quality in many different species.

The Resurrection Plant has attracted the attention of scientists interested in deciphering how it survives extreme drought conditions. Seeds, also, may provide clues to plant mechanisms for surviving on limited water; many plant seeds go through periods of intense dryness before germinating. Identifying the genes and mechanisms that allow seeds and drought-resistant plants to stay alive could help scientists create more droughtresistant crops for the future.

Agricultural Fields
Image courtesy USDA/ARS.
One approach to developing droughtresistant plants is to identify the genes behind the physical mechanisms through which certain species manage to survive drought. Another approach is to decipher the signaling system through which normal crop plants activate such genes under conditions of extreme stress, and find ways to trigger those signaling activities more quickly. Other approaches focus on "predrought preparation" by encouraging certain growth patterns or behaviors that would help plants survive drought, should it occur.


Reducing Fertilizer Use

Historically, farmers in developed countries have blanketed their fields with enormous quantities of fertilizers several times per year to ensure maximal plant growth. But a rising awareness of the negative consequences of this practice—downstream algal blooms that block sunlight, deplete water of oxygen, and kill marine and aquatic organisms—has prompted researchers to take a closer look at how to effectively fertilize crops without jeopardizing the health of downstream ecosystems.

Genomic sciences are helping scientists to pinpoint exactly when and how plants actually use nutrients so they can advise farmers on the most effective times to apply fertilizers. Scientists are also gaining insights on genes that help plants to efficiently extract nutrients from soil; plants that can utilize existing nutrients more fully would also reduce the need for fertilizers.


Future Directions: What if Plants Could Clean Up Pollution?

Contamination by harmful metals or chemicals can cause vast swaths of land to become unusable. In some cases, no plants will grow in contaminated soil; in others, plants will grow but can pass harmful contaminants up the food chain to consumers.

Barren Soil
Barren land resulting from zinc contamination from a smeltry that
operated here from 1890 to 1980. Image courtesy USDA.
Historically, contaminated soils are either avoided or treated by scooping topsoil away to landfills—a measure that is costly, wasteful, and disturbing to natural systems. But new alternatives have recently surfaced: Scientists are discovering some amazing plants that can actually clean up soil contaminants themselves, through a process known as phytoremediation.

Arabidopsis halleri thrives even in soils with astoundingly high concentrations of typically harmful metals such as zinc and cadmium. Where most plants would be poisoned by an accumulation of 1,000 parts per million (ppm) zinc or 50 ppm cadmium in their shoots, this plant can withstand as much as 21,500 ppm zinc and 350 ppm cadmium with few or no symptoms of toxicity. Arabidopsis halleri and other plants, when grown on contaminated soil and then appropriately disposed of, can be an effective tool for cleaning up contamination.

Another plant, Amaranthus retroflexus, has been shown to effectively remove cesium (the radioactive form of which is present in the environment as a byproduct of above ground nuclear testing) from soil. Researchers estimate that two to three yearly crops of the plant could clean up an entire contaminated site in less than 15 years.

Phytoremediation research could also help to identify plants that can survive in acid soils—those with naturally occurring high levels of aluminum. Acid soils have historically been avoided because they limit crop productivity, but they are widespread, comprising over half of the world's 8 billion acres of land that would otherwise be considered arable. Scientists are working to identify the genes that help some plants deal with high aluminum concentrations, with the ultimate goal of developing more tolerant crops that farmers could cultivate on lands currently considered marginal.


New Approaches: The Science of Metagenomics
No plant is an island. In fact, plants are surrounded by millions of microorganisms that play a crucial role in their survival. Microorganisms manufacture nutrients, for example, by converting atmospheric nitrogen into ammonia and recycling nutrients from decaying plants and animals. Some microorganisms living in soil actually protect plants from diseases—when these microorganisms are removed, the plants are far more susceptible to infection.

The new science of metagenomics bypasses the need to isolate and culture individual species, enabling scientists to apply genomic analysis to The New Science of Metagenomicsentire microbial communities in the environment at once. Metagenomics offers scientists unprecedented access to crucial soil microorganisms and can reveal much about a microbial community's members and the functions they are performing. For information on metagenomics and plant-associated microbes, see the National Research Council report, The New Science of Metagenomics: Revealing the Secrets of Our Microbial Planet.

A better understanding of microbial communities in and around plants could lead to ways to harness the power of these communities to produce healthier and more robust crops. One example of this is an approach called "no-till" farming. In no-till farming, the plant biomass that remains on a field after a crop is harvested is simply left on the soil surface rather than being plowed under before reseeding. This leaves soil microbial communities intact and allows them to continue to perform their vital functions.


Fighting Plant Pathogens in a Changing Climate

In 1989, a half-inch flying insect known as the glassy-winged sharpshooter hitchhiked from its home in the southeastern United States to southern California. There, it found a hospitable climate and a bountiful supply of what quickly became its favorite food—grape vines. Within two years, the insect had made a name for itself as one of the most serious threats ever to face the California wine industry.

Glassy-winged Sharpshooter
Glassy-winged Sharpshooter. Image
courtesy ARS/USDA; photo by
Peggy Greb.
The glassy-winged sharpshooter is a voracious eater, but that isn't how it shut down most of the vineyards in California's Temecula Valley and continues to threaten vineyards and other crops elsewhere. The true culprit is another hitchhiker—a bacterium called Xylella fastidiosa. Glassy-winged sharpshooters inadvertently carry Xylella in their mouths as they flit from plant to plant, injecting the bacterium into healthy plants after feeding on sick ones. The resulting infection is known as Pierce's disease, which causes the vines to slowly die over a period of one to three years.

As global climate change brings warmer temperatures, biologists predict that the ranges of Xylella and other crop pathogens could expand. Areas that are currently too cold for the sharpshooter may eventually become more hospitable, causing the threat of Pierce's disease and others to continue to grow.

Currently, there are few ways to fight Pierce's disease. Farmers prevent its spread by removing infected crops at the first sign of symptoms, and they also use insecticides to contain its insect vector, the glassywinged sharpshooter. But there is new hope that grapes may be able to resist Pierce's disease on their own. Some plants appear to be more susceptible to the disease than others; scientists are hard at work in search of the genes that allow certain plants to resist infection. Uncovering genes for Xylella resistance could help breeders grow plants with natural immunity to Pierce's disease—reigning in this fierce pathogen even as climate change expands its potential reach.


This web page is based on the National Academies' educational booklet New Horizons in Plant Sciences.

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